LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-200c-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-200c-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
256180-256200
0.014
0
8mer
86928-86953
0.008
1
7mer
115594-115611
0.007
1
7mer
187638-187661
0.006
2
7mer
135807-135826
0.006
1
7mer
162920-162943
0.006
1
8mer
244288-244302
0.006
1
7mer
167284-167299
0.005
1
7mer
8566-8585
0.005
3
7mer
84858-84872
0.005
3
7mer
171405-171429
0.005
0
7mer
49673-49699
0.005
1
7mer
173561-173573
0.005
1
8mer
114286-114310
0.004
1
7mer
36154-36168
0.004
0
7mer
232558-232584
0.004
0
7mer
95704-95724
0.004
1
7mer
69876-69895
0.004
0
7mer
106175-106201
0.004
0
8mer
75968-75982
0.004
Not Conserved
7mer
31213-31231
0.004
0
7mer
201601-201625
0.003
0
8mer
13654-13660
0.003
0
7mer
244462-244482
0.003
1
7mer
22653-22675
0.003
2
7mer
31832-31855
0.003
1
7mer
148755-148777
0.003
2
7mer
106518-106537
0.003
Not Conserved
7mer
106531-106554
0.003
1
7mer
111791-111803
0.003
0
7mer
171481-171507
0.003
0
6mer
131789-131804
0.003
8
7mer
82228-82246
0.003
0
8mer
205298-205309
0.003
0
6mer
7942-7961
0.003
3
6mer
155321-155341
0.003
1
7mer
244247-244271
0.002
Not Conserved
7mer
161656-161678
0.002
3
6mer
91094-91110
0.002
4
6mer
46386-46408
0.002
1
6mer
178935-178956
0.002
1
6mer
172983-172997
0.002
0
6mer
146251-146275
0.002
1
6mer
98370-98391
0.002
4
6mer
64550-64574
0.002
2
6mer
71187-71202
0.002
1
6mer
21735-21755
0.002
1
6mer
198056-198076
0.002
0
6mer
94475-94499
0.002
2
6mer
248811-248834
0.002
0
6mer
150714-150729
0.002
1
6mer
18646-18672
0.002
1
6mer
89958-89968
0.002
1
6mer
145930-145953
0.002
Not Conserved
6mer
161099-161115
0.002
1
6mer
34037-34059
0.002
1
6mer
8768-8788
0.002
0
6mer
50581-50599
0.002
1
6mer
70396-70414
0.002
1
6mer
47478-47497
0.002
1
6mer
3766-3777
0.002
1
8mer+wobble
42507-42533
0.002
0
6mer
167503-167514
0.002
1
6mer
36592-36616
0.002
0
6mer
159900-159920
0.002
1
6mer
35733-35751
0.001
3
6mer
108646-108667
0.001
0
6mer
175744-175757
0.001
1
6mer
177782-177795
0.001
1
6mer
18446-18471
0.001
1
6mer
180797-180820
0.001
0
6mer
92512-92535
0.001
0
6mer
57640-57660
0.001
1
6mer
90365-90388
0.001
1
6mer
20877-20893
0.001
1
6mer
146674-146678
0.001
Not Conserved
6mer
16284-16304
0.001
1
6mer
200202-200222
0.001
0
6mer
55557-55569
0.001
2
6mer
252807-252831
0.001
1
6mer
106025-106051
0.001
1
6mer
64296-64320
0.001
0
6mer
17662-17676
0.001
0
6mer
147296-147319
0.001
1
6mer
76473-76497
0.001
0
6mer
2797-2814
0.001
0
6mer
8255-8274
0.001
Not Conserved
6mer
175505-175530
0.001
2
6mer
79344-79364
0.001
1
6mer
219209-219234
0.001
Not Conserved
6mer
18489-18507
0.001
0
6mer
51278-51302
0.001
0
6mer
76513-76526
0.001
1
6mer
83945-83958
0.001
0
6mer
151762-151787
0.001
0
6mer
79403-79417
0.001
1
XLOC_014147
hsa-miR-200c-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029754
Biotype: transcript isomorph
Gene id: XLOC_014147
Gene Name: XLOC_014147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
681-706
0.166
0
XLOC_010383
hsa-miR-200c-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021785
Biotype: transcript isomorph
Gene id: XLOC_010383
Gene Name: XLOC_010383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
610-628
0.143
0
6mer
404-424
0.009
0
RP11-340I6.7
hsa-miR-200c-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000600182
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-162
0.145
0
XLOC_006092
hsa-miR-200c-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014132
Biotype: transcript isomorph
Gene id: XLOC_006092
Gene Name: XLOC_006092
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-259
0.138
1
RP11-923I11.8
hsa-miR-200c-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618634
Biotype: antisense
Gene id: ENSG00000278451
Gene Name: RP11-923I11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-40
0.112
11
7mer
37-55
0.025
7
RP11-340I6.7
hsa-miR-200c-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000596569
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-215
0.137
0
XLOC_003450
hsa-miR-200c-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007980
Biotype: transcript isomorph
Gene id: XLOC_003450
Gene Name: XLOC_003450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-246
0.128
0
KIAA0087
hsa-miR-200c-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-69
0.109
8
6mer
553-563
0.005
4
6mer
3402-3425
0.003
1
RP11-474P2.6
hsa-miR-200c-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621248
Biotype: lincRNA
Gene id: ENSG00000275481
Gene Name: RP11-474P2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2986-3007
0.100
5
7mer
2572-2582
0.011
1
RP11-691G17.1
hsa-miR-200c-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2173-2200
0.105
1
6mer
1115-1135
0.004
0
RP11-434B12.1
hsa-miR-200c-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000569008
Biotype: lincRNA
Gene id: ENSG00000260837
Gene Name: RP11-434B12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-65
0.067
1
8mer
934-949
0.021
1
6mer
816-842
0.003
0
XLOC_001401
hsa-miR-200c-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1323-1343
0.077
0
6mer
1907-1931
0.013
0
RP11-262H14.3
hsa-miR-200c-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438699
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-213
0.065
0
7mer
418-440
0.024
0
XLOC_008328
hsa-miR-200c-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017652
Biotype: transcript isomorph
Gene id: XLOC_008328
Gene Name: XLOC_008328
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
950-967
0.089
0
FLJ22763
hsa-miR-200c-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000612064
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-103
0.078
4
RP11-66H6.4
hsa-miR-200c-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000615581
Biotype: sense_intronic
Gene id: ENSG00000274038
Gene Name: RP11-66H6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-447
0.068
5
6mer
127-148
0.006
2
AC006548.28
hsa-miR-200c-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-253
0.019
1
8mer
64726-64748
0.008
1
7mer
28702-28722
0.004
1
7mer
77796-77812
0.003
0
7mer
10420-10447
0.003
2
7mer
7522-7536
0.003
1
7mer
54349-54372
0.003
Not Conserved
6mer
923-942
0.002
0
6mer
19023-19049
0.002
3
6mer
32355-32376
0.002
1
8mer
78605-78629
0.002
Not Conserved
6mer
77400-77425
0.002
0
6mer
54774-54793
0.002
0
6mer
53947-53973
0.002
Not Conserved
6mer
31661-31685
0.002
1
6mer
80205-80225
0.002
0
6mer
30729-30755
0.002
1
6mer
44881-44906
0.002
1
6mer
30960-30979
0.001
0
6mer
68727-68749
0.001
0
6mer
73521-73548
0.001
0
6mer
79846-79872
0.001
0
6mer
67475-67498
0.001
0
6mer
27500-27522
0.001
Not Conserved
6mer
65959-65981
0.001
Not Conserved
6mer
67564-67582
0.001
Not Conserved
6mer
27414-27440
0.000
0
XLOC_002102
hsa-miR-200c-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004261
Biotype: transcript isomorph
Gene id: XLOC_002102
Gene Name: XLOC_002102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-83
0.072
1
RP11-839D17.3
hsa-miR-200c-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533504
Biotype: antisense
Gene id: ENSG00000255129
Gene Name: RP11-839D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-200c-3p
Sequence: uaauacugccggguaaugaugga
MirBase ID: MIMAT0000617
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-408
0.068
1
6mer
306-320
0.004
2
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